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Pubmed MCP Server

v1.0.0•APIs•stable

Search PubMed/Europe PMC, fetch articles and full text (PMC/EPMC/Unpaywall), citations, MeSH terms via MCP. STDIO or Streamable HTTP.

ai-agentsai-toolsbioinformaticsbiomedicalcitations
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About

Search PubMed/Europe PMC, fetch articles and full text (PMC/EPMC/Unpaywall), citations, MeSH terms via MCP. STDIO or Streamable HTTP.

Features

  • fetch_pubmed_content
  • generate_pubmed_chart
  • get_pubmed_article_connections
  • pubmed_research_agent
  • search_pubmed_articles

Use Cases

Fetches detailed information from PubMed using NCBI EFetch. Can be used with a direct list of PMIDs or with queryKey/webEnv from an ESearch history entry. Supports pagination (retstart, retmax) when using history. Available 'detailLevel' options: 'ab
Generates a customizable chart (PNG) from structured data. Supports 'bar', 'line', 'scatter', 'pie', 'doughnut', 'bubble', 'radar', and 'polarArea' plots. Requires data values and field mappings for axes. Optional parameters allow for titles and dime
Finds articles related to a source PubMed ID (PMID) or retrieves formatted citations for it. Supports finding similar articles, articles that cite the source, articles referenced by the source (via NCBI ELink), or fetching data to generate citations
Generates a standardized JSON research plan outline from component details you provide. It accepts granular inputs for all research phases (conception, data collection, analysis, dissemination, cross-cutting concerns). If 'include_detailed_prompts_fo
Searches PubMed for articles using a query term and optional filters (max results, sort, date range, publication types). Uses NCBI ESearch to find PMIDs and ESummary (optional) for brief summaries. Returns a JSON object with search parameters, ESearc
cyanheads

Maintainer

LicenseApache-2.0
Languagetypescript
Versionv1.0.0
UpdatedMay 20, 2026
Statushealthy
Maintenanceactive

Works with

ClaudeOpenAIwindowsmacoslinux
View SourceBrowse All Servers

Installation

NPM

npx -y @cyanheads/pubmed-mcp-server

Manual Installation

npx -y @cyanheads/pubmed-mcp-server

Examples

Basic Configuration

Configure Pubmed MCP Server

npx -y @cyanheads/pubmed-mcp-server

Configuration

Configuration Details

Config File

claude_desktop_config.json

Web UI

Not available

Security

Authentication

RequiredNo

Features

Data Encryption
Audit Logging
RBAC Support

Performance

Response Metrics

Response Time< 200ms
ThroughputMedium

Resource Usage

Memory UsageLow
CPU UsageLow

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Quick Config Preview

{ "mcpServers": { "pubmed": { "command": "npx", "args": ["-y", "@cyanheads/pubmed-mcp-server"] } } }

Add this to your claude_desktop_config.json or .cursor/mcp.json

Read the full setup guide →

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